cgatools::mapping::MergedMap2SamConfig Class Reference

Inheritance diagram for cgatools::mapping::MergedMap2SamConfig:
cgatools::mapping::Map2SamConfig

List of all members.

Public Attributes

double mapqAlpha_
double minMateGapFrequency_
bool printAlleleInfo_
bool primaryMappingsOnly_
uint8_t minMapQ_
std::string evidenceCacheRoot_
std::ostream * debugOutStream_

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