cgatools::variants::PhasedHypothesis Class Reference

Class to hold a single possible phasing of loci in a Superlocus. More...

Public Member Functions
	PhasedHypothesis ()
	Constructs an empty PhasedHypothesis.
	PhasedHypothesis (const reference::Range &range, size_t ploidy)
	Constructs the PhasedHypothesis.
size_t	size () const
	Returns the ploidy of the PhasedHypothesis.
const reference::Range &	getRange () const
	Returns the reference range of the PhasedHypothesis.
const PhasedAllele &	operator[] (size_t offset) const
	Returns the given PhasedAllele.
PhasedAllele &	operator[] (size_t offset)
	Returns the given PhasedAllele.
void	swap (PhasedHypothesis &other)
Static Public Member Functions
static void	findBestDiff (const Superlocus &sl, size_t maxHypothesisCount, const std::vector< PhasedHypothesis > &lhs, const std::vector< PhasedHypothesis > &rhs, const reference::CrrFile &crr, CallDiffResult &result)
	Returns the best calldiff result, given the list of PhasedHypothesis for two files.
static void	testVariant (const Superlocus &sl, const std::vector< PhasedHypothesis > &hyps, const reference::Range &varRange, const std::string &varAllele, const reference::CrrFile &crr, std::string &result)

Detailed Description

Class to hold a single possible phasing of loci in a Superlocus.

static void cgatools::variants::PhasedHypothesis::findBestDiff	(	const Superlocus &	sl,
		size_t	maxHypothesisCount,
		const std::vector< PhasedHypothesis > &	lhs,
		const std::vector< PhasedHypothesis > &	rhs,
		const reference::CrrFile &	crr,
		CallDiffResult &	result
	)			`[static]`

Returns the best calldiff result, given the list of PhasedHypothesis for two files.

The documentation for this class was generated from the following file: