cgatools::mapping::GapEst::TemplateSequenceRetriever< TSequence > Class Template Reference

Retrieves sequence at a given offset from the end of the clone. More...

#include <GapsEstimator.hpp>

Inheritance diagram for cgatools::mapping::GapEst::TemplateSequenceRetriever< TSequence >:

List of all members.

Public Member Functions
	TemplateSequenceRetriever (const TSequence &sequence, bool isCircular, boost::uint32_t cloneEnd, int side, int strand)
void	getSequence (Sequence &seq, int cloneEndOffset, int sequenceLength) const
	Store in seq the sequence starting at cloneEndOffset from the end of the clone, working towards the mate gap sequenceLength bases.

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Detailed Description

template<class TSequence>
class cgatools::mapping::GapEst::TemplateSequenceRetriever< TSequence >

Retrieves sequence at a given offset from the end of the clone.

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Member Function Documentation

template<class TSequence >

void cgatools::mapping::GapEst::TemplateSequenceRetriever< TSequence >::getSequence	(	Sequence &	seq,
		int	cloneEndOffset,
		int	sequenceLength
	)			const [inline, virtual]

Store in seq the sequence starting at cloneEndOffset from the end of the clone, working towards the mate gap sequenceLength bases.

Implements cgatools::mapping::GapEst::SequenceRetriever.

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The documentation for this class was generated from the following file:

• GapsEstimator.hpp