cgatools::mapping::OutLaneBatchStreams Class Reference

creates a family of lane/batch files and generates standard metadata header More...

#include <LaneBatchCache.hpp>

Inheritance diagram for cgatools::mapping::OutLaneBatchStreams:

List of all members.

Public Types
typedef boost::ptr_map < std::string, util::CompressedOutputStream >	OutputLaneBatches
Public Member Functions
	OutLaneBatchStreams (const boost::filesystem::path &outputPrefix, const std::string &fileType)
	OutLaneBatchStreams (const boost::filesystem::path &outputPrefix, const std::string &fileType, const std::string &headerLine)
std::ostream &	getBatchStream (const std::string &slide, const std::string &lane, size_t batchNo)
Protected Member Functions
virtual void	writeMetadata (std::ostream &output, const std::string &slide, const std::string &lane, size_t batchNo) const
virtual void	addMetadata (util::DelimitedFileMetadata &meta) const
Protected Attributes
boost::filesystem::path	outputPrefix_
const std::string	fileType_
const std::string	headerLine_
OutputLaneBatches	outputLanes_

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Detailed Description

creates a family of lane/batch files and generates standard metadata header

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The documentation for this class was generated from the following file:

• LaneBatchCache.hpp