cgatools::cgdata::CnvSegmentStore Class Reference

Loads CNV segment data from a file and caches it in memory. More...

#include <CnvSegmentStore.hpp>

Inheritance diagram for cgatools::cgdata::CnvSegmentStore:

List of all members.

Public Member Functions
	CnvSegmentStore (const reference::CrrFile &crr, const GenomeMetadata &exp)
	Loads all CNV segment data from a given export package.
bool	hasCalledPloidy () const
	True if the ploidy calls are present in the export package.
const CnvSegmentData *	getBestOverlappingSegment (const reference::Range &r) const
	Returns the CNV segment data for the segment with the longest overlap with the given range.
void	bindColumns (util::DelimitedFile &df, reference::Range &range, CnvSegmentData &data)
	This function is not a part of the true public interface of this class.

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Detailed Description

Loads CNV segment data from a file and caches it in memory.

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Member Function Documentation

const CnvSegmentData* cgatools::cgdata::CnvSegmentStore::getBestOverlappingSegment

(

const reference::Range &

r

)

const

Returns the CNV segment data for the segment with the longest overlap with the given range.

In case of a tie, returns the data for the first segment in the reference order.

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The documentation for this class was generated from the following file:

• CnvSegmentStore.hpp