cgatools::junctions::JuctionStatisticsCollector Class Reference

List of all members.

Public Member Functions
	JuctionStatisticsCollector (uint32_t distanceTolerance)
void	findOneSideNeighbours (const Junctions &junctions, int firstSide)
void	findNeighbours (const Junctions &junctions, int sideToCompare=JUNCTION_BOTH_SIDES)
void	run (const Junctions &junctions, std::ostream &out)
Protected Attributes
uint32_t	distanceTolerance_
uint32_t	searchDistanceTolerance_
CounterSet < JunctionCounterFields, int64_t >	counters_
util::GenericHistogram< size_t, size_t >	scoreHistogram_
util::GenericHistogram< size_t, size_t >	oneSideNeighbourDist_
util::GenericHistogram< size_t, size_t >	twoSideNeighbourDist_
boost::array < util::GenericHistogram < size_t, size_t >, 3 >	clusterSizeInBases_
boost::array < util::GenericHistogram < size_t, size_t >, 3 >	clusterSizeInJunctions_
std::ostream *	out_

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The documentation for this class was generated from the following file:

• JunctionStat.hpp