- p -

• pack() : cgatools::mapping::Cigar
• parse() : cgatools::mapping::SamTagField< SamTag > , cgatools::reference::RangeAnnotationStore< Derived, TValue >::MidpointField< Value > , cgatools::util::ValueVectorField< Value > , cgatools::variants::Call::TotalScoreField , cgatools::variants::Call::AlternativeCallsField , cgatools::util::StringField , cgatools::util::DelimitedFieldParser , cgatools::util::CharField , cgatools::util::StrandField , cgatools::reference::ChromosomeIdField , cgatools::util::IgnoreField , cgatools::util::SideField , cgatools::util::DelimitedField , cgatools::util::ValueField< Value > , cgatools::variants::Call::VarQualityField , cgatools::variants::Call::VarFilterField
• parseAlternativeCalls() : cgatools::variants::Call
• parseLine() : cgatools::util::DelimitedLineParser
• parseVarFilter() : cgatools::variants::Call
• PhasedAllele() : cgatools::variants::PhasedAllele
• PhasedHypothesis() : cgatools::variants::PhasedHypothesis
• pos() : cgatools::variants::PhasedAllele
• printAlleleInfoTag() : cgatools::mapping::SamRecordGenerator
• printAlternatives() : cgatools::mapping::SamRecordGenerator
• printList() : cgatools::junctions::FullGenomeJunctionComparator
• printMateSequence() : cgatools::mapping::SamRecordGenerator
• printMultiList() : cgatools::junctions::FullGenomeJunctionComparator
• processMappings() : cgatools::mapping::Map2SamConverter , cgatools::mapping::MergedMap2SamConverter , cgatools::mapping::BaseMap2SamConverter
• push_back() : cgatools::mapping::Cigar
• put() : cgatools::util::IntervalTree< TRange, TBoundary, TValue, Overlap, GetBoundary, BoundaryLess >