- w -

• write() : cgatools::junctions::JunctionSideSection , cgatools::junctions::Junction , cgatools::variants::Call , cgatools::junctions::JunctionFile
• writeAllFields() : cgatools::junctions::JunctionVcfRecordSource
• writeAlt() : cgatools::junctions::JunctionVcfRecordWriter , cgatools::mobileelement::MeiFileVcfRecordWriter , cgatools::variants::VariantFileVcfRecordWriter , cgatools::conv::VcfRecordWriter , cgatools::copynumber::CnvFileVcfRecordWriter
• writeAsOneLine() : cgatools::variants::Locus
• writeFilter() : cgatools::conv::VcfRecordWriter , cgatools::junctions::JunctionVcfRecordWriter
• writeFormat() : cgatools::junctions::JunctionVcfRecordWriter , cgatools::mobileelement::MeiFileVcfRecordWriter , cgatools::variants::VariantFileVcfRecordWriter , cgatools::conv::VcfRecordWriter , cgatools::copynumber::CnvFileVcfRecordWriter
• writeId() : cgatools::conv::VcfRecordWriter , cgatools::junctions::JunctionVcfRecordWriter
• writeInfo() : cgatools::conv::VcfRecordWriter , cgatools::copynumber::CnvFileVcfRecordWriter , cgatools::junctions::JunctionVcfRecordWriter , cgatools::mobileelement::MeiFileVcfRecordWriter , cgatools::variants::VariantFileVcfRecordWriter
• writeJunctionAltFieldToVcf() : cgatools::junctions::JunctionVcfWriter
• writeJunctionComparisonField() : cgatools::junctions::JunctionVcfWriter
• writeJunctionFilterFieldToVcf() : cgatools::junctions::JunctionVcfWriter
• writeJunctionInfoFieldToVcf() : cgatools::junctions::JunctionVcfWriter
• writeJunctionToVcf() : cgatools::junctions::JunctionVcfWriter
• writeJunctionVcfHeaders() : cgatools::junctions::JunctionVcfWriter
• writeMappingRecord() : cgatools::mapping::MergedMap2SamConverter
• writeQual() : cgatools::conv::VcfRecordWriter , cgatools::junctions::JunctionVcfRecordWriter
• writeRecord() : cgatools::conv::VcfRecordWriter
• writeRef() : cgatools::copynumber::CnvFileVcfRecordWriter , cgatools::variants::VariantFileVcfRecordWriter , cgatools::conv::VcfRecordWriter , cgatools::junctions::JunctionVcfRecordWriter , cgatools::mobileelement::MeiFileVcfRecordWriter
• writeSample() : cgatools::conv::VcfRecordWriter , cgatools::copynumber::CnvFileVcfRecordWriter , cgatools::variants::VariantFileVcfRecordWriter , cgatools::mobileelement::MeiFileVcfRecordWriter , cgatools::junctions::JunctionVcfRecordWriter