Here is a list of all documented class members with links to the class documentation for each member:

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• add_back() : cgatools::command::Cigar
• addCall() : cgatools::variants::Locus , cgatools::variants::PhasedAllele
• addCallOffset() : cgatools::variants::Allele
• addField() : cgatools::util::DelimitedLineParser
• addFieldParsers() : cgatools::variants::Call
• addSequence() : cgatools::variants::PhasedAllele , cgatools::reference::CrrFileWriter
• ALL_HAPLOTYPES : cgatools::variants::Call
• Allele() : cgatools::variants::Allele
• allele() : cgatools::variants::PhasedAllele
• alleleSeq_ : cgatools::variants::Call
• ALT_CONSISTENT : cgatools::variants::CallDiffResult
• ALT_IDENTICAL : cgatools::variants::CallDiffResult
• appendSequence() : cgatools::reference::CompactDnaSequence
• appendUnambiguousSequence() : cgatools::reference::CompactDnaSequence