- c -

• Call() : cgatools::variants::Call
• calledSequence() : cgatools::variants::Call
• calls() : cgatools::variants::PhasedAllele
• clear() : cgatools::util::IntervalTree< TRange, TBoundary, TValue, Overlap, GetBoundary, BoundaryLess >
• clearCalls() : cgatools::variants::Allele , cgatools::variants::Locus
• close() : cgatools::reference::CrrFileWriter
• CnvSegmentStore() : cgatools::cgdata::CnvSegmentStore
• compareBySide() : cgatools::junctions::FullGenomeJunctionComparator
• computeMappingWeights() : cgatools::mapping::MergedMap2SamConverter
• contains() : cgatools::reference::Range , cgatools::util::FastRangeSet
• countSupportingDnbs() : cgatools::cgdata::EvidenceReader
• CrrFileWriter() : cgatools::reference::CrrFileWriter
• currentVersion() : cgatools::reference::CrrFile