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• open() : cgatools::util::CompressedInputStream , cgatools::util::CompressedOutputStream
• openBZ2() : cgatools::util::CompressedOutputStream , cgatools::util::CompressedInputStream , cgatools::util::CompressedOutputStream
• openCompressedInputStreamByExtension() : cgatools::util::InputStream
• openCompressedOutputStreamByExtension() : cgatools::util::OutputStream
• openStdin() : cgatools::command::Command
• openStdout() : cgatools::command::Command
• operator()() : cgatools::command::Command
• operator*() : cgatools::variants::SuperlocusIterator , cgatools::mapping::DnbSequenceIterator
• operator++() : cgatools::variants::SuperlocusIterator
• operator->() : cgatools::variants::SuperlocusIterator
• operator=() : cgatools::util::IntervalTree< TRange, TBoundary, TValue, Overlap, GetBoundary, BoundaryLess > , cgatools::variants::Locus
• operator[]() : cgatools::variants::PhasedHypothesis , cgatools::mapping::AlleleSequenceAligner
• overlappingRange() : cgatools::reference::Range