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filterDuplicatedMappings() :
cgatools::mapping::MergedMap2SamConverter
filterMappingRecords() :
cgatools::mapping::MergedMap2SamConverter
findBestDiff() :
cgatools::variants::PhasedHypothesis
flagAsSVCandidate() :
cgatools::mapping::SamRecordGenerator
formatDescription() :
cgatools::command::Command
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